Useful links

Saccharomyces Genome Database | SGD (yeastgenome.org)

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Pseudomonas Genome Database

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Salis Lab RBS and promoter calculator [De Novo DNA: The Future of Genetic Systems Design and Engineering (salislab.net)]

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Database for E. coli genome, transcriptional regulation, and metabolic pathways http://www.ecocyc.org/ 

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EcoCyc http://www.metacyc.org/ 

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UNAFold (combination of mFold and DINAMelt software): RNA folding and DNA hybridization/melting prediction http://www.unafold.org/ 

 

Kyoto Encyclopedia of Genes and Genomes http://www.genome.jp/kegg 

 

RegulonDB, E. coli Transcriptional Network http://regulondb.ccg.unam.mx/

 

Standard Registry of Biological Parts http://parts.igem.org/Main_Page

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Plasmid Database http://www.addgene.org/ 

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Database of useful biological numbers http://bionumbers.hms.harvard.edu/

 

Synthetic Biology Engineering Research Center http://www.synberc.org/ 

 

BIOFAB: International Open Facility Advancing Biotechnology http://www.biofab.org/data 

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Codon Optimizer for prokaryotes http://genomes.urv.es/OPTIMIZER/ 

Gene2Oligo: oligonucleotide design for in vitro gene synthesis https://openebench.bsc.es/tool/gene2oligo

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Softberry Home Page, BPROM - Prediction of bacterial promoters

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